Don't know how else to describe them. They are very brief interruptions in the rendered versions of a green screen clip on top of a background clip. The "blips" appear to be the green screen showing through.
When I play the clips back in the timeline, it seems normal. But when rendered to Sony AVC or MainConcept AVC, the blips appear. When I render out to an .MOV file, it is normal.
I've tried it with the GPU enabled and disabled.
I'm trying to prepare these for YouTube, and similar.
Any suggestions? The files are from my Canon C100mk2.