This video explains what I think is happening as the rest of the render seems to be fine,

This video shows my settings.

And here is some info on the source files,

I just want to be able to render this video without having to deal with a black flicker. I've tried many ideas, turning GPU off, updating codex... Any help would be greatly appreciated.
*FIXED - I went into my graphics card settings, and I enabled a setting on it called "OpenGL Triple Buffering" and for some reason that worked paired with some OpenGL settings in Options>Preference Shift Click> internal turned to FALSE.